Webb20 apr. 2013 · Residues with an agreement of ΔδCα within ± 2 p.p.m. are shown in green. Deviations of > 2 p.p.m. are indicated in red, and unassigned residues are indicated in gray. (B). Hinge motion predicted from the structure of H-NS 1–83 dimers with hingeprot. Top: hinge motion around residues 28 and 31*. Bottom: hinge motion around residues … Webb14 juli 2014 · The most closely related approaches include Stonehinge , HingeProt , and DynDom . Both Stonehinge and HingeProt rely on analysis of rigidity and flexibility …
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Webbprogram HingeProt (41), which identified 4 hinge residues withinthehGMPKstructure:Ser-35,Ala-87,Pro-124,andGlu-157. Based on this result, we defined three distinct structural domains:domain1,spanningresidues1–34,88–123,and158– 197; domain 2, spanning residues 36–86; and domain 3, span-ning residues 125–156 (Fig. 2). In support of the ... Webb10 jan. 2024 · Binding-induced backbone and large-scale conformational changes represent one of the major challenges in the modeling of biomolecular complexes by docking. To address this challenge, we have developed a flexible multidomain docking protocol that follows a “divide-and-conquer” approach to model both large-scale domain … north dakota oil and gas leases
RESEARCH Open Access Computational prediction of hinge axes …
Webb13 apr. 2011 · In this work, two different outputs provided by the HingeProt server are used: the predicted hinge regions and the eigenvalues obtained by the decomposition of the connectivity (Kirchhoff) matrix (Haliloglu et al., 1997). The hinge predictions obtained from HingeProt are filtered in order to preserve the secondary structure integrity. http://dyndom.cmp.uea.ac.uk/dyndom/dyndomDownload.jsp Webb1 aug. 2024 · Similarly, using flexibility analysis by HingeProt and FIRST servers to estimate the residues for substitutions, the catalytic performance of Bacillus circulans GH11 xylanase has been improved via ... north dakota oil companies stock